Mouse-Derived Gut Microbiota Library

GemPharmatech has established an open mouse gut microbiota library, mGBC, by isolating and culturing bacteria from fecal and intestinal contents of mice (Mus musculus) obtained from different laboratories and the wild. A total of 150 isolates belonging to 142 different species spanning 71 genera, 28 families, and 5 phyla were included in the mGBC, including 9 newly identified species, based on detailed morphological and 16S sequencing analysis and LPSN.

Verrucomicrobia


Species

Family 

GPT Strain ID

NMDC Accession Number

NMDC Nucleotide Sequences 

Akkermansia muciniphila

Verrucomicrobiae

GPTB0005

NMDC20057722

NMDCN0001CH1


Bacteroidetes


Species

Family 

GPT Strain ID

NMDC Accession Number

NMDC Nucleotide Sequences 

Bacteroides acidifaciens

Bacteroidaceae

GPTB0083

NMDC20057802

NMDCN0001CJH

Bacteroides caccae

Bacteroidaceae

GPTB0010

NMDC20057727

NMDCN0001CH6

Bacteroides caecimuris

Bacteroidaceae

GPTB0082

NMDC20057801

NMDCN0001CJG

Bacteroides dorei

Bacteroidaceae

GPTB0073

NMDC20057791

NMDCN0001CJ6

Bacteroides faecichinchillae

Bacteroidaceae

GPTB0004

NMDC20057721

NMDCN0001CH0

Bacteroides ovatus

Bacteroidaceae

GPTB0009

NMDC20057726

NMDCN0001CH5

Bacteroides stercorirosoris

Bacteroidaceae

GPTB0008

NMDC20057725

NMDCN0001CH4

Bacteroides thetaiotaomicron

Bacteroidaceae

GPTB0036

NMDC20057753

NMDCN0001CI0

Bacteroides uniformis

Bacteroidaceae

GPTB0044

NMDC20057761

NMDCN0001CI8

Bacteroides xylanisolvens

Bacteroidaceae

GPTB0055

NMDC20057772

NMDCN0001CIJ

Bacteroides nordii

Bacteroidaceae

GPTB0053

NMDC20057770

NMDCN0001CIH

Phocaeicola sartorii

Bacteroidaceae

GPTB0043

NMDC20057760

NMDCN0001CI7

Phocaeicola vulgatus

Bacteroidaceae

GPTB0049

NMDC20057766

NMDCN0001CID

Parabacteroides distasonis

Tannerellaceae

GPTB0035

NMDC20057752

NMDCN0001CHV

Parabacteroides goldsteinii

Tannerellaceae

GPTB0019

NMDC20057736

NMDCN0001CHF

Parabacteroides johnsonii

Tannerellaceae

GPTB0075

NMDC20057793

NMDCN0001CJ8

Parabacteroides merdae

Tannerellaceae

GPTB0086

NMDC20057805

NMDCN0001CJK

Heminiphilus faecis

Muribaculaceae

GPTB0137

NMDC20057858

NMDCN0001CL9

Muribaculum intestinale

Muribaculaceae

GPTB0014

NMDC20057731

NMDCN0001CHA

Butyricimonas virosa

Odoribacteraceae

GPTB0028

NMDC20057745

NMDCN0001CHO


Actinobacteria


Species

Family

GPT Strain ID

NMDC Accession Number

NMDC Nucleotide Sequences 

Bifidobacterium pseudolongum

Bifidobacteriaceae

GPTB0058

NMDC20057775

NMDCN0001CIM

Bifidobacterium pseudolongum

Bifidobacteriaceae

GPTB0066

NMDC20057783

NMDCN0001CIU

Brevibacterium linens

Brevibacteriaceae

GPTB0040

NMDC20057757

NMDCN0001CI4

Brachybacterium paraconglomeratum

Dermabacteraceae

GPTB0041

NMDC20057758

NMDCN0001CI5

Corynebacterium casei

Corynebacteriaceae

GPTB0039

NMDC20057756

NMDCN0001CI3

Corynebacterium glyciniphilum

Corynebacteriaceae

GPTB0052

NMDC20057769

NMDCN0001CIG

Caniella muris

Atopobiaceae

GPTB0071

NMDC20057789

NMDCN0001CJ4

Leptogranulimonas caecicola

Atopobiaceae

GPTB0135

NMDC20057856

NMDCN0001CL7

Adlercreutzia caecimuris

Eggerthellaceae

GPTB0070

NMDC20057788

NMDCN0001CJ3

Adlercreutzia muris

Eggerthellaceae

GPTB0087

NMDC20057806

NMDCN0001CJL

Stereobacter intestinalis

Eggerthellaceae

GPTB0065

NMDC20057782

NMDCN0001CIT


Firmicutes

Species

Family

GPT Strain ID

NMDC Accession Number

NMDC Nucleotide Sequences 

Staphylococcus arlettae

Staphylococcaceae

GPTB0027

NMDC20057744

NMDCN0001CHN

Staphylococcus capitis

Staphylococcaceae

GPTB0084

NMDC20057803

NMDCN0001CJI

Staphylococcus cohnii

Staphylococcaceae

GPTB0026

NMDC20057743

NMDCN0001CHM

Staphylococcus epidermidis

Staphylococcaceae

GPTB0076

NMDC20057794

NMDCN0001CJ9

Staphylococcus equorum

Staphylococcaceae

GPTB0034

NMDC20057751

NMDCN0001CHU

Staphylococcus hominis

Staphylococcaceae

GPTB0042

NMDC20057759

NMDCN0001CI6

Staphylococcus nepalensis

Staphylococcaceae

GPTB0025

NMDC20057742

NMDCN0001CHL

Staphylococcus saprophyticus

Staphylococcaceae

GPTB0023

NMDC20057740

NMDCN0001CHJ

Staphylococcus sciuri

Staphylococcaceae

GPTB0015

NMDC20057732

NMDCN0001CHB

Staphylococcus xylosus

Staphylococcaceae

GPTB0013

NMDC20057730

NMDCN0001CH9

Jeotgalicoccus nanhaiensis

Staphylococcaceae

GPTB0046

NMDC20057763

NMDCN0001CIA

Mammaliicoccus lentus

Staphylococcaceae

GPTB0022

NMDC20057739

NMDCN0001CHI

Bacillus cereus

Bacillaceae

GPTB0110

NMDC20057830

NMDCN0001CKD

Bacillus licheniformis

Bacillaceae

GPTB0098

NMDC20057818

NMDCN0001CK1

Enterococcus avium

Enterococcaceae

GPTB0085

NMDC20057804

NMDCN0001CJJ

Enterococcus casseliflavus

Enterococcaceae

GPTB0017

NMDC20057734

NMDCN0001CHD

Enterococcus faecalis

Enterococcaceae

GPTB0007

NMDC20057724

NMDCN0001CH3

Enterococcus faecium

Enterococcaceae

GPTB0105

NMDC20057825

NMDCN0001CK8

Enterococcus gallinarum

Enterococcaceae

GPTB0011

NMDC20057728

NMDCN0001CH7

Enterococcus hirae

Enterococcaceae

GPTB0002

NMDC20057719

NMDCN0001CGU

Enterococcus ratti

Enterococcaceae

GPTB0078

NMDC20057796

NMDCN0001CJB

Aerococcus viridans

Aerococcaceae

GPTB0136

NMDC20057857

NMDCN0001CL8

Atopostipes suicloacalis

Carnobacteriaceae

GPTB0127

NMDC20057848

NMDCN0001CKV

Lactobacillus animalis

Lactobacillaceae

GPTB0024

NMDC20057741

NMDCN0001CHK

lactobacillus caviae

Lactobacillaceae

GPTB0097

NMDC20057817

NMDCN0001CK0

Lactobacillus faecis

Lactobacillaceae

GPTB0016

NMDC20057733

NMDCN0001CHC

Lactobacillus intestinalis

Lactobacillaceae

GPTB0047

NMDC20057764

NMDCN0001CIB

Lactobacillus johnsonii

Lactobacillaceae

GPTB0006

NMDC20057723

NMDCN0001CH2

Lactobacillus vaginalis

Lactobacillaceae

GPTB0068

NMDC20057785

NMDCN0001CJ0

Ligilactobacillus murinus

Lactobacillaceae

GPTB0001

NMDC20057718

NMDCN0001CGT

Limosilactobacillus reuteri

Lactobacillaceae

GPTB0018

NMDC20057735

NMDCN0001CHE

Streptococcus alactolyticus

Streptococcaceae

GPTB0057

NMDC20057774

NMDCN0001CIL

Streptococcus danieliae

Streptococcaceae

GPTB0045

NMDC20057762

NMDCN0001CI9

Streptococcus ferus

Streptococcaceae

GPTB0020

NMDC20057737

NMDCN0001CHG

Streptococcus hyointestinalis

Streptococcaceae

GPTB0067

NMDC20057784

NMDCN0001CIV

Streptococcus merionis

Streptococcaceae

GPTB0080

NMDC20057799

NMDCN0001CJE

Lactococcus formosensis

Streptococcaceae

GPTB0069

NMDC20057786

NMDCN0001CJ1

Lactococcus formosensis

Streptococcaceae

GPTB0069-1

NMDC20057787

NMDCN0001CJ2

Lactococcus garvieae

Streptococcaceae

GPTB0061

NMDC20057778

NMDCN0001CIP

Lactococcus lactis

Streptococcaceae

GPTB0059

NMDC20057776

NMDCN0001CIN

Lactococcus taiwanensis

Streptococcaceae

GPTB0060

NMDC20057777

NMDCN0001CIO

Lactococcus taiwanensis

Streptococcaceae

GPTB0048

NMDC20057765

NMDCN0001CIC

Allobaculum mucolyticum

Erysipelotrichaceae

GPTB0111

NMDC20057831

NMDCN0001CKE

Amedibacillus dolichus

Erysipelotrichaceae

GPTB0119

NMDC20057840

NMDCN0001CKN

Dubosiella newyorkensis

Erysipelotrichaceae

GPTB0056

NMDC20057773

NMDCN0001CIK

Faecalibaculum rodentium

Erysipelotrichaceae

GPTB0074

NMDC20057792

NMDCN0001CJ7

Ileibacterium valens

Erysipelotrichaceae

GPTB0114

NMDC20057835

NMDCN0001CKI

Longibaculum muris

Erysipelotrichaceae

GPTB0116

NMDC20057837

NMDCN0001CKK

Thomasclavelia ramosa

Erysipelotrichaceae

GPTB0124

NMDC20057845

NMDCN0001CKS

Thomasclavelia cocleata

Erysipelotrichaceae

GPTB0003

NMDC20057720

NMDCN0001CGV

Clostridium innocuum

Erysipelotrichaceae

GPTB0033

NMDC20057750

NMDCN0001CHT

Erysipelotrichaceae bacterium

Erysipelotrichaceae

GPTB0145

NMDC20057866

NMDCN0001CLH

Anaerosalibacter bizertensis

Tissierellaceae

GPTB0126

NMDC20057847

NMDCN0001CKU

Tissierella praeacuta

Tissierellaceae

GPTB0093

NMDC20057813

NMDCN0001CJS

Faeciclostridum intestinale

Clostridiaceae

GPTB0115

NMDC20057836

NMDCN0001CKJ

Clostridium botulinum

Clostridiaceae

GPTB0037

NMDC20057754

NMDCN0001CI1

Clostridium perfringens

Clostridiaceae

GPTB0143

NMDC20057864

NMDCN0001CLF

Clostridium sporogenes

Clostridiaceae

GPTB0054

NMDC20057771

NMDCN0001CII

Clostridium porci

Clostridiaceae

GPTB0117

NMDC20057838

NMDCN0001CKL

Clostridium faecis

Clostridiaceae

GPTB0125

NMDC20057846

NMDCN0001CKT

Anaerotruncus colihominis

Oscillospiraceae

GPTB0092

NMDC20057811

NMDCN0001CJQ

Anaerotruncus colihominis

Oscillospiraceae

GPTB0092-1

NMDC20057812

NMDCN0001CJR

Bittarella massiliensis

Oscillospiraceae

GPTB0128

NMDC20057849

NMDCN0001CL0

Flavonifractor plautii

Oscillospiraceae

GPTB0129

NMDC20057850

NMDCN0001CL1

Flintibacter butyricus

Oscillospiraceae

GPTB0107

NMDC20057827

NMDCN0001CKA

Flintibacter butyricus

Oscillospiraceae

GPTB0122

NMDC20057843

NMDCN0001CKQ

Flintibacter muris

Oscillospiraceae

GPTB0103

NMDC20057823

NMDCN0001CK6

Lipomuribacter intestinalis

Oscillospiraceae

GPTB0064

NMDC20057781

NMDCN0001CIS

Phocea massiliensis

Oscillospiraceae

GPTB0113

NMDC20057834

NMDCN0001CKH

Rigidibacter intestinalis

Oscillospiraceae

GPTB0134

NMDC20057855

NMDCN0001CL6

Ruminococcus muris

Oscillospiraceae

GPTB0109

NMDC20057829

NMDCN0001CKC

Intestinifractor faecis

Oscillospiraceae

GPTB0133

NMDC20057854

NMDCN0001CL5

Acutalibacter intestinalis

Oscillospiraceae

GPTB0101

NMDC20057821

NMDCN0001CK4

Oscillospiraceae bacterium

Oscillospiraceae

GPTB0094

NMDC20057814

NMDCN0001CJT

Guopingia tenuis

Christensenellaceae

GPTB0106

NMDC20057826

NMDCN0001CK9

Anaerofustis stercorihominis

Eubacteriaceae

GPTB0050

NMDC20057767

NMDCN0001CIE

Anaerotruncus colihominis

Eubacteriaceae

GPTB0095

NMDC20057815

NMDCN0001CJU

Anaerotruncus colihominis

Eubacteriaceae

GPTB0096

NMDC20057816

NMDCN0001CJV

Emergencia timonensis

Eubacteriaceae

GPTB0123

NMDC20057844

NMDCN0001CKR

Clostridioides difficile

Peptostreptococcaceae

GPTB0141

NMDC20057862

NMDCN0001CLD

Paraclostridium bifermentans

Peptostreptococcaceae

GPTB0012

NMDC20057729

NMDCN0001CH8

Anaerostipes caccae

Lachnospiraceae

GPTB0030

NMDC20057747

NMDCN0001CHQ

Antifaeciroseburia intestinalis

Lachnospiraceae

GPTB0112

NMDC20057832

NMDCN0001CKF

Antifaeciroseburia intestinalis

Lachnospiraceae

GPTB0112-1

NMDC20057833

NMDCN0001CKG

Blautia coccoides

Lachnospiraceae

GPTB0130

NMDC20057851

NMDCN0001CL2

Blautia hominis

Lachnospiraceae

GPTB0120

NMDC20057841

NMDCN0001CKO

Blautia producta

Lachnospiraceae

GPTB0142

NMDC20057863

NMDCN0001CLE

Blautia pseudococcoides

Lachnospiraceae

GPTB0051

NMDC20057768

NMDCN0001CIF

Enterocloster aldenensis

Lachnospiraceae

GPTB0144

NMDC20057865

NMDCN0001CLG

Faecalicatena contorta

Lachnospiraceae

GPTB0100

NMDC20057820

NMDCN0001CK3

Faecalicatena orotica

Lachnospiraceae

GPTB0131

NMDC20057852

NMDCN0001CL3

Faecibacter intestinalis

Lachnospiraceae

GPTB0132

NMDC20057853

NMDCN0001CL4

Lacrimispora celerecrescens

Lachnospiraceae

GPTB0138

NMDC20057859

NMDCN0001CLA

Murispiricella intestinalis

Lachnospiraceae

GPTB0090

NMDC20057809

NMDCN0001CJO

Musculimicrobium intestinale

Lachnospiraceae

GPTB0139

NMDC20057860

NMDCN0001CLB

Paramurimonas faecis

Lachnospiraceae

GPTB0146

NMDC20057867

NMDCN0001CLI

Paramurimonas intestinalis

Lachnospiraceae

GPTB0102

NMDC20057822

NMDCN0001CK5

Roseburia muris

Lachnospiraceae

GPTB0091

NMDC20057810

NMDCN0001CJP

Schaedlerella arabinosiphila

Lachnospiraceae

GPTB0077

NMDC20057795

NMDCN0001CJA

Lachnospiraceae bacterium

Lachnospiraceae

GPTB0079

NMDC20057797

NMDCN0001CJC

Lachnospiraceae bacterium

Lachnospiraceae

GPTB0079-1

NMDC20057798

NMDCN0001CJD

Lachnospiraceae bacterium

Lachnospiraceae

GPTB0099

NMDC20057819

NMDCN0001CK2

Lachnospiraceae bacterium

Lachnospiraceae

GPTB0104

NMDC20057824

NMDCN0001CK7

Lachnospiraceae bacterium

Lachnospiraceae

GPTB0118

NMDC20057839

NMDCN0001CKM

Lachnospiraceae bacterium

Lachnospiraceae

GPTB0121

NMDC20057842

NMDCN0001CKP

Lachnospiraceae bacterium

Lachnospiraceae

GPTB0140

NMDC20057861

NMDCN0001CLC


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