Mouse-Derived Gut Microbiota Library

GemPharmatech has established an open mouse gut microbiota library, mGBC, by isolating and culturing bacteria from fecal and intestinal contents of mice (Mus musculus) obtained from different laboratories and the wild. A total of 150 isolates belonging to 142 different species spanning 71 genera, 28 families, and 5 phyla were included in the mGBC, including 9 newly identified species, based on detailed morphological and 16S sequencing analysis and LPSN.

Verrucomicrobia

Species	Family	GPT Strain ID	NMDC Accession Number	NMDC Nucleotide Sequences
Akkermansia muciniphila	Verrucomicrobiae	GPTB0005	NMDC20057722	NMDCN0001CH1

Bacteroidetes

Species	Family	GPT Strain ID	NMDC Accession Number	NMDC Nucleotide Sequences
Bacteroides acidifaciens	Bacteroidaceae	GPTB0083	NMDC20057802	NMDCN0001CJH
Bacteroides caccae	Bacteroidaceae	GPTB0010	NMDC20057727	NMDCN0001CH6
Bacteroides caecimuris	Bacteroidaceae	GPTB0082	NMDC20057801	NMDCN0001CJG
Bacteroides dorei	Bacteroidaceae	GPTB0073	NMDC20057791	NMDCN0001CJ6
Bacteroides faecichinchillae	Bacteroidaceae	GPTB0004	NMDC20057721	NMDCN0001CH0
Bacteroides ovatus	Bacteroidaceae	GPTB0009	NMDC20057726	NMDCN0001CH5
Bacteroides stercorirosoris	Bacteroidaceae	GPTB0008	NMDC20057725	NMDCN0001CH4
Bacteroides thetaiotaomicron	Bacteroidaceae	GPTB0036	NMDC20057753	NMDCN0001CI0
Bacteroides uniformis	Bacteroidaceae	GPTB0044	NMDC20057761	NMDCN0001CI8
Bacteroides xylanisolvens	Bacteroidaceae	GPTB0055	NMDC20057772	NMDCN0001CIJ
Bacteroides nordii	Bacteroidaceae	GPTB0053	NMDC20057770	NMDCN0001CIH
Phocaeicola sartorii	Bacteroidaceae	GPTB0043	NMDC20057760	NMDCN0001CI7
Phocaeicola vulgatus	Bacteroidaceae	GPTB0049	NMDC20057766	NMDCN0001CID
Parabacteroides distasonis	Tannerellaceae	GPTB0035	NMDC20057752	NMDCN0001CHV
Parabacteroides goldsteinii	Tannerellaceae	GPTB0019	NMDC20057736	NMDCN0001CHF
Parabacteroides johnsonii	Tannerellaceae	GPTB0075	NMDC20057793	NMDCN0001CJ8
Parabacteroides merdae	Tannerellaceae	GPTB0086	NMDC20057805	NMDCN0001CJK
Heminiphilus faecis	Muribaculaceae	GPTB0137	NMDC20057858	NMDCN0001CL9
Muribaculum intestinale	Muribaculaceae	GPTB0014	NMDC20057731	NMDCN0001CHA
Butyricimonas virosa	Odoribacteraceae	GPTB0028	NMDC20057745	NMDCN0001CHO

Actinobacteria

Species	Family	GPT Strain ID	NMDC Accession Number	NMDC Nucleotide Sequences
Bifidobacterium pseudolongum	Bifidobacteriaceae	GPTB0058	NMDC20057775	NMDCN0001CIM
Bifidobacterium pseudolongum	Bifidobacteriaceae	GPTB0066	NMDC20057783	NMDCN0001CIU
Brevibacterium linens	Brevibacteriaceae	GPTB0040	NMDC20057757	NMDCN0001CI4
Brachybacterium paraconglomeratum	Dermabacteraceae	GPTB0041	NMDC20057758	NMDCN0001CI5
Corynebacterium casei	Corynebacteriaceae	GPTB0039	NMDC20057756	NMDCN0001CI3
Corynebacterium glyciniphilum	Corynebacteriaceae	GPTB0052	NMDC20057769	NMDCN0001CIG
Caniella muris	Atopobiaceae	GPTB0071	NMDC20057789	NMDCN0001CJ4
Leptogranulimonas caecicola	Atopobiaceae	GPTB0135	NMDC20057856	NMDCN0001CL7
Adlercreutzia caecimuris	Eggerthellaceae	GPTB0070	NMDC20057788	NMDCN0001CJ3
Adlercreutzia muris	Eggerthellaceae	GPTB0087	NMDC20057806	NMDCN0001CJL
Stereobacter intestinalis	Eggerthellaceae	GPTB0065	NMDC20057782	NMDCN0001CIT

Firmicutes

Species	Family	GPT Strain ID	NMDC Accession Number	NMDC Nucleotide Sequences
Staphylococcus arlettae	Staphylococcaceae	GPTB0027	NMDC20057744	NMDCN0001CHN
Staphylococcus capitis	Staphylococcaceae	GPTB0084	NMDC20057803	NMDCN0001CJI
Staphylococcus cohnii	Staphylococcaceae	GPTB0026	NMDC20057743	NMDCN0001CHM
Staphylococcus epidermidis	Staphylococcaceae	GPTB0076	NMDC20057794	NMDCN0001CJ9
Staphylococcus equorum	Staphylococcaceae	GPTB0034	NMDC20057751	NMDCN0001CHU
Staphylococcus hominis	Staphylococcaceae	GPTB0042	NMDC20057759	NMDCN0001CI6
Staphylococcus nepalensis	Staphylococcaceae	GPTB0025	NMDC20057742	NMDCN0001CHL
Staphylococcus saprophyticus	Staphylococcaceae	GPTB0023	NMDC20057740	NMDCN0001CHJ
Staphylococcus sciuri	Staphylococcaceae	GPTB0015	NMDC20057732	NMDCN0001CHB
Staphylococcus xylosus	Staphylococcaceae	GPTB0013	NMDC20057730	NMDCN0001CH9
Jeotgalicoccus nanhaiensis	Staphylococcaceae	GPTB0046	NMDC20057763	NMDCN0001CIA
Mammaliicoccus lentus	Staphylococcaceae	GPTB0022	NMDC20057739	NMDCN0001CHI
Bacillus cereus	Bacillaceae	GPTB0110	NMDC20057830	NMDCN0001CKD
Bacillus licheniformis	Bacillaceae	GPTB0098	NMDC20057818	NMDCN0001CK1
Enterococcus avium	Enterococcaceae	GPTB0085	NMDC20057804	NMDCN0001CJJ
Enterococcus casseliflavus	Enterococcaceae	GPTB0017	NMDC20057734	NMDCN0001CHD
Enterococcus faecalis	Enterococcaceae	GPTB0007	NMDC20057724	NMDCN0001CH3
Enterococcus faecium	Enterococcaceae	GPTB0105	NMDC20057825	NMDCN0001CK8
Enterococcus gallinarum	Enterococcaceae	GPTB0011	NMDC20057728	NMDCN0001CH7
Enterococcus hirae	Enterococcaceae	GPTB0002	NMDC20057719	NMDCN0001CGU
Enterococcus ratti	Enterococcaceae	GPTB0078	NMDC20057796	NMDCN0001CJB
Aerococcus viridans	Aerococcaceae	GPTB0136	NMDC20057857	NMDCN0001CL8
Atopostipes suicloacalis	Carnobacteriaceae	GPTB0127	NMDC20057848	NMDCN0001CKV
Lactobacillus animalis	Lactobacillaceae	GPTB0024	NMDC20057741	NMDCN0001CHK
lactobacillus caviae	Lactobacillaceae	GPTB0097	NMDC20057817	NMDCN0001CK0
Lactobacillus faecis	Lactobacillaceae	GPTB0016	NMDC20057733	NMDCN0001CHC
Lactobacillus intestinalis	Lactobacillaceae	GPTB0047	NMDC20057764	NMDCN0001CIB
Lactobacillus johnsonii	Lactobacillaceae	GPTB0006	NMDC20057723	NMDCN0001CH2
Lactobacillus vaginalis	Lactobacillaceae	GPTB0068	NMDC20057785	NMDCN0001CJ0
Ligilactobacillus murinus	Lactobacillaceae	GPTB0001	NMDC20057718	NMDCN0001CGT
Limosilactobacillus reuteri	Lactobacillaceae	GPTB0018	NMDC20057735	NMDCN0001CHE
Streptococcus alactolyticus	Streptococcaceae	GPTB0057	NMDC20057774	NMDCN0001CIL
Streptococcus danieliae	Streptococcaceae	GPTB0045	NMDC20057762	NMDCN0001CI9
Streptococcus ferus	Streptococcaceae	GPTB0020	NMDC20057737	NMDCN0001CHG
Streptococcus hyointestinalis	Streptococcaceae	GPTB0067	NMDC20057784	NMDCN0001CIV
Streptococcus merionis	Streptococcaceae	GPTB0080	NMDC20057799	NMDCN0001CJE
Lactococcus formosensis	Streptococcaceae	GPTB0069	NMDC20057786	NMDCN0001CJ1
Lactococcus formosensis	Streptococcaceae	GPTB0069-1	NMDC20057787	NMDCN0001CJ2
Lactococcus garvieae	Streptococcaceae	GPTB0061	NMDC20057778	NMDCN0001CIP
Lactococcus lactis	Streptococcaceae	GPTB0059	NMDC20057776	NMDCN0001CIN
Lactococcus taiwanensis	Streptococcaceae	GPTB0060	NMDC20057777	NMDCN0001CIO
Lactococcus taiwanensis	Streptococcaceae	GPTB0048	NMDC20057765	NMDCN0001CIC
Allobaculum mucolyticum	Erysipelotrichaceae	GPTB0111	NMDC20057831	NMDCN0001CKE
Amedibacillus dolichus	Erysipelotrichaceae	GPTB0119	NMDC20057840	NMDCN0001CKN
Dubosiella newyorkensis	Erysipelotrichaceae	GPTB0056	NMDC20057773	NMDCN0001CIK
Faecalibaculum rodentium	Erysipelotrichaceae	GPTB0074	NMDC20057792	NMDCN0001CJ7
Ileibacterium valens	Erysipelotrichaceae	GPTB0114	NMDC20057835	NMDCN0001CKI
Longibaculum muris	Erysipelotrichaceae	GPTB0116	NMDC20057837	NMDCN0001CKK
Thomasclavelia ramosa	Erysipelotrichaceae	GPTB0124	NMDC20057845	NMDCN0001CKS
Thomasclavelia cocleata	Erysipelotrichaceae	GPTB0003	NMDC20057720	NMDCN0001CGV
Clostridium innocuum	Erysipelotrichaceae	GPTB0033	NMDC20057750	NMDCN0001CHT
Erysipelotrichaceae bacterium	Erysipelotrichaceae	GPTB0145	NMDC20057866	NMDCN0001CLH
Anaerosalibacter bizertensis	Tissierellaceae	GPTB0126	NMDC20057847	NMDCN0001CKU
Tissierella praeacuta	Tissierellaceae	GPTB0093	NMDC20057813	NMDCN0001CJS
Faeciclostridum intestinale	Clostridiaceae	GPTB0115	NMDC20057836	NMDCN0001CKJ
Clostridium botulinum	Clostridiaceae	GPTB0037	NMDC20057754	NMDCN0001CI1
Clostridium perfringens	Clostridiaceae	GPTB0143	NMDC20057864	NMDCN0001CLF
Clostridium sporogenes	Clostridiaceae	GPTB0054	NMDC20057771	NMDCN0001CII
Clostridium porci	Clostridiaceae	GPTB0117	NMDC20057838	NMDCN0001CKL
Clostridium faecis	Clostridiaceae	GPTB0125	NMDC20057846	NMDCN0001CKT
Anaerotruncus colihominis	Oscillospiraceae	GPTB0092	NMDC20057811	NMDCN0001CJQ
Anaerotruncus colihominis	Oscillospiraceae	GPTB0092-1	NMDC20057812	NMDCN0001CJR
Bittarella massiliensis	Oscillospiraceae	GPTB0128	NMDC20057849	NMDCN0001CL0
Flavonifractor plautii	Oscillospiraceae	GPTB0129	NMDC20057850	NMDCN0001CL1
Flintibacter butyricus	Oscillospiraceae	GPTB0107	NMDC20057827	NMDCN0001CKA
Flintibacter butyricus	Oscillospiraceae	GPTB0122	NMDC20057843	NMDCN0001CKQ
Flintibacter muris	Oscillospiraceae	GPTB0103	NMDC20057823	NMDCN0001CK6
Lipomuribacter intestinalis	Oscillospiraceae	GPTB0064	NMDC20057781	NMDCN0001CIS
Phocea massiliensis	Oscillospiraceae	GPTB0113	NMDC20057834	NMDCN0001CKH
Rigidibacter intestinalis	Oscillospiraceae	GPTB0134	NMDC20057855	NMDCN0001CL6
Ruminococcus muris	Oscillospiraceae	GPTB0109	NMDC20057829	NMDCN0001CKC
Intestinifractor faecis	Oscillospiraceae	GPTB0133	NMDC20057854	NMDCN0001CL5
Acutalibacter intestinalis	Oscillospiraceae	GPTB0101	NMDC20057821	NMDCN0001CK4
Oscillospiraceae bacterium	Oscillospiraceae	GPTB0094	NMDC20057814	NMDCN0001CJT
Guopingia tenuis	Christensenellaceae	GPTB0106	NMDC20057826	NMDCN0001CK9
Anaerofustis stercorihominis	Eubacteriaceae	GPTB0050	NMDC20057767	NMDCN0001CIE
Anaerotruncus colihominis	Eubacteriaceae	GPTB0095	NMDC20057815	NMDCN0001CJU
Anaerotruncus colihominis	Eubacteriaceae	GPTB0096	NMDC20057816	NMDCN0001CJV
Emergencia timonensis	Eubacteriaceae	GPTB0123	NMDC20057844	NMDCN0001CKR
Clostridioides difficile	Peptostreptococcaceae	GPTB0141	NMDC20057862	NMDCN0001CLD
Paraclostridium bifermentans	Peptostreptococcaceae	GPTB0012	NMDC20057729	NMDCN0001CH8
Anaerostipes caccae	Lachnospiraceae	GPTB0030	NMDC20057747	NMDCN0001CHQ
Antifaeciroseburia intestinalis	Lachnospiraceae	GPTB0112	NMDC20057832	NMDCN0001CKF
Antifaeciroseburia intestinalis	Lachnospiraceae	GPTB0112-1	NMDC20057833	NMDCN0001CKG
Blautia coccoides	Lachnospiraceae	GPTB0130	NMDC20057851	NMDCN0001CL2
Blautia hominis	Lachnospiraceae	GPTB0120	NMDC20057841	NMDCN0001CKO
Blautia producta	Lachnospiraceae	GPTB0142	NMDC20057863	NMDCN0001CLE
Blautia pseudococcoides	Lachnospiraceae	GPTB0051	NMDC20057768	NMDCN0001CIF
Enterocloster aldenensis	Lachnospiraceae	GPTB0144	NMDC20057865	NMDCN0001CLG
Faecalicatena contorta	Lachnospiraceae	GPTB0100	NMDC20057820	NMDCN0001CK3
Faecalicatena orotica	Lachnospiraceae	GPTB0131	NMDC20057852	NMDCN0001CL3
Faecibacter intestinalis	Lachnospiraceae	GPTB0132	NMDC20057853	NMDCN0001CL4
Lacrimispora celerecrescens	Lachnospiraceae	GPTB0138	NMDC20057859	NMDCN0001CLA
Murispiricella intestinalis	Lachnospiraceae	GPTB0090	NMDC20057809	NMDCN0001CJO
Musculimicrobium intestinale	Lachnospiraceae	GPTB0139	NMDC20057860	NMDCN0001CLB
Paramurimonas faecis	Lachnospiraceae	GPTB0146	NMDC20057867	NMDCN0001CLI
Paramurimonas intestinalis	Lachnospiraceae	GPTB0102	NMDC20057822	NMDCN0001CK5
Roseburia muris	Lachnospiraceae	GPTB0091	NMDC20057810	NMDCN0001CJP
Schaedlerella arabinosiphila	Lachnospiraceae	GPTB0077	NMDC20057795	NMDCN0001CJA
Lachnospiraceae bacterium	Lachnospiraceae	GPTB0079	NMDC20057797	NMDCN0001CJC
Lachnospiraceae bacterium	Lachnospiraceae	GPTB0079-1	NMDC20057798	NMDCN0001CJD
Lachnospiraceae bacterium	Lachnospiraceae	GPTB0099	NMDC20057819	NMDCN0001CK2
Lachnospiraceae bacterium	Lachnospiraceae	GPTB0104	NMDC20057824	NMDCN0001CK7
Lachnospiraceae bacterium	Lachnospiraceae	GPTB0118	NMDC20057839	NMDCN0001CKM
Lachnospiraceae bacterium	Lachnospiraceae	GPTB0121	NMDC20057842	NMDCN0001CKP
Lachnospiraceae bacterium	Lachnospiraceae	GPTB0140	NMDC20057861	NMDCN0001CLC

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